PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_2EEECCC4B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 376aa    MW: 40916.8 Da    PI: 7.9667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_2EEECCC4B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-3094150259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkve+sa  +++++i+Y+g+Hnh+
  Traes_4AL_2EEECCC4B.1  94 DDGYNWRKYGQKAVKGGEYPRSYYKCTQASCPVKKKVEHSA-YGQITQIIYRGQHNHQ 150
                            8****************************************.9**************8 PP

2WRKY102.72.1e-32260318159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++er+++dp++v++tYeg+H h+
  Traes_4AL_2EEECCC4B.1 260 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERCSQDPTAVITTYEGKHSHD 318
                            59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2785152IPR003657WRKY domain
SuperFamilySSF1182906.02E-2491152IPR003657WRKY domain
SMARTSM007743.5E-3093151IPR003657WRKY domain
PfamPF031068.0E-2394150IPR003657WRKY domain
PROSITE profilePS5081122.81494152IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-36247320IPR003657WRKY domain
SuperFamilySSF1182901.44E-29252320IPR003657WRKY domain
PROSITE profilePS5081136.173255320IPR003657WRKY domain
SMARTSM007745.8E-38260319IPR003657WRKY domain
PfamPF031064.0E-25261318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MANFEMSHQQ ALAQVTAQAV HSQYTVGSQA DYSLPFSSAT TSALTSQFIN SSANVTSMKE  60
TATLPLHTVN DNLKSNEVSQ GFQTSALTVD KPADDGYNWR KYGQKAVKGG EYPRSYYKCT  120
QASCPVKKKV EHSAYGQITQ IIYRGQHNHQ RPPKRRSKDG GNLLNEDDFP ENRDALTRSE  180
PGSQDHSGKV EVSNDGITGP SVSKRRGGGD QSSGSSDTEE DNDEAGDDNG DAGIVNANKR  240
HVPAPAQRII VQTTSEIDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTYQG CDVKKHIERC  300
SQDPTAVITT YEGKHSHDVP AARSSVAAAA SANASSSISL LHRGQKAASS SQRVLPRAAL  360
HTSDSSLQLK EENEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A6e-3879321578Probable WRKY transcription factor 4
1wj2_A6e-3879321578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RPPKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8273950.0KR827395.1 Triticum aestivum WRKY44 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559732.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_010233399.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLW5DMS70.0W5DMS7_WHEAT; Uncharacterized protein
STRINGMLOC_31894.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-73WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]